![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.003G023200.1 | ||||||||
Common Name | B456_003G023200, LOC105789771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21293.8 Da PI: 5.1728 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 80 | 128 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIr p + r++lg+fg+ae Aa+a+++a+ k++g Gorai.003G023200.1 80 YRGVRRRP-WGKWAAEIRNP-----KlaVRVWLGTFGSAEAAARAYDRAAVKFRG 128 9*******.**********9.....557**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.342 | 79 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 79 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-13 | 79 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 79 | 138 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.94E-20 | 79 | 138 | No hit | No description |
PRINTS | PR00367 | 7.6E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-11 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MENYNTPLPL TREKEYEIMV STLVHVINGT QPDTAVSDDN NGIHYFNPTC TPLTVNGCDV 60 FPRSQQPLPT VPVPTKERNY RGVRRRPWGK WAAEIRNPKL AVRVWLGTFG SAEAAARAYD 120 RAAVKFRGDK AKTNFPLSDY KTELQEVEEE KKSNGDKGQC SKENEDENGG EAWEIFSEGE 180 LRELVKMD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 75 | 137 | 1 | 64 | ATERF1 |
3gcc_A | 2e-20 | 75 | 137 | 1 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472584.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9FH54 | 5e-29 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A0D2NVA2 | 1e-140 | A0A0D2NVA2_G |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18345 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.003G023200.1 |
Entrez Gene | 105789771 |
Publications ? help Back to Top | |||
---|---|---|---|
|