PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G023200.1
Common NameB456_003G023200, LOC105789771
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 189aa    MW: 21293.8 Da    PI: 5.1728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G023200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1880128355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+W+AeIr p     +   r++lg+fg+ae Aa+a+++a+ k++g
  Gorai.003G023200.1  80 YRGVRRRP-WGKWAAEIRNP-----KlaVRVWLGTFGSAEAAARAYDRAAVKFRG 128
                         9*******.**********9.....557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.34279136IPR001471AP2/ERF domain
SMARTSM003801.2E-3679142IPR001471AP2/ERF domain
PfamPF008477.9E-1379128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2179138IPR016177DNA-binding domain
CDDcd000181.94E-2079138No hitNo description
PRINTSPR003677.6E-118091IPR001471AP2/ERF domain
PRINTSPR003677.6E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MENYNTPLPL TREKEYEIMV STLVHVINGT QPDTAVSDDN NGIHYFNPTC TPLTVNGCDV  60
FPRSQQPLPT VPVPTKERNY RGVRRRPWGK WAAEIRNPKL AVRVWLGTFG SAEAAARAYD  120
RAAVKFRGDK AKTNFPLSDY KTELQEVEEE KKSNGDKGQC SKENEDENGG EAWEIFSEGE  180
LRELVKMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2075137164ATERF1
3gcc_A2e-2075137164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472584.11e-140PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9FH545e-29EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D2NVA21e-140A0A0D2NVA2_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-23ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]